SNP Profiles of LP 1 /41 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
AACCACGGGGCTCCCTCCGGTTCTCTAT
1._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
2._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
3._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
4._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
5._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
6._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
7._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
8._GC-05-055-2-06
AACCACGGGGCTCCCTCCGGTTCTCTAT
9._GC-05-148-4-01
AACCACGGGGCTCCCTCCGGTTCTCTAT
10._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
11._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
12._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
13._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
14._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
15._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
16._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
17._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
18._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
19._LP_1_/41_[POU]
AACCAC____CTCCGG_CT__
20._RUQ_353
__CC__TT________
21._RUQ_353
_-CC__TT_CC__TTTT__
22._LP_1_/41_[POU]
ATTTCC____CCCTGG_TT__
23._RUQ_353
ATTTCC____CCCTGG_TT__
24._RUQ_353
AT_CCAAAA_AAGG_GGAAAAGGAT
 1516171819202122232425262728
_Input profile
ACAAAGGGCCGGCTAATTGGATAACGGG
1._GC-05-148-4-01
ACAAAGGGCCGGCTAATTGGATAACGGG
2._GC-05-148-4-01
ACAAAGGGCCGGCTAATTGGATAACGGG
3._GC-05-055-2-06
ACAAAGGGCCGGCTAATTGGATAACGGG
4._GC-05-055-2-06
ACAAAGGGCCGGCTAATTGGATAACGGG
5._GC-05-148-4-01
ACAAAGGGCCGGCTAATTGGATAACGGG
6._GC-05-055-2-06
ACAAAGGGCCGGCTAATTGGATAACGGG
7._GC-05-055-2-06
ACAAAGGGCCGGCTAATTGGATAACGGG
8._GC-05-055-2-06
AC_AGGGCCGGCTAATTGGATAACGGG
9._GC-05-148-4-01
ACAAAGGG_GGCTAATTGGATAACGGG
10._LP_1_/41_[POU]
__AG__GG____ATAA_GG
11._LP_1_/41_[POU]
__AG__GG____ATAA_GG
12._LP_1_/41_[POU]
__AG__GG____ATAA_GG
13._LP_1_/41_[POU]
__AG__GG____ATAA_GG
14._LP_1_/41_[POU]
__AG__GG____ATAA_GG
15._LP_1_/41_[POU]
__AG__GG____ATAA_GG
16._LP_1_/41_[POU]
__AG__GG____ATAA_GG
17._LP_1_/41_[POU]
__AG__GG____ATAA_GG
18._LP_1_/41_[POU]
__AG__GG____ATAA_GG
19._LP_1_/41_[POU]
__AG__GG____ATAA_GG
20._RUQ_353
__AGCT_________GG
21._RUQ_353
____CG____GG_TTCCGG
22._LP_1_/41_[POU]
__AG__GG____AATT_GG
23._RUQ_353
__AG__GG____AATT_GG
24._RUQ_353
ACAAAGGG_GGGGAGGGGGAATTGGCC
 2930313233343536373839404142
_Input profile
AATTGGAGGGCCAAGTGGGTAACTAGCC
1._GC-05-148-4-01
AATTGGAGGGCCAAGTGGGTAACTAGCC
2._GC-05-148-4-01
AATTGGAGGGCCAAGTGGGTAACTAGCC
3._GC-05-055-2-06
AATTGGAGGGCCAAGTGGGTAACTAGCC
4._GC-05-055-2-06
AATTGGAGGGCCAAGTGGGTAACTAGCC
5._GC-05-148-4-01
AATTGGAGGGCCAAGTGGGTAACTAGCC
6._GC-05-055-2-06
AATTGGAGGGCCAAGTGGGTAACTAGCC
7._GC-05-055-2-06
AATTGGAGGGCCAAGTGGGTAACTAGCC
8._GC-05-055-2-06
AATTGGAGGGCCAAGTGGGTAACTAGCC
9._GC-05-148-4-01
AATTGGAGGGCCAAGTGGGTAACTAGCC
10._LP_1_/41_[POU]
AA___GG_AAGT__AA___
11._LP_1_/41_[POU]
AA___GG_AAGT__AA___
12._LP_1_/41_[POU]
AA___GG_AAGT__AA___
13._LP_1_/41_[POU]
AA___GG_AAGT__AA___
14._LP_1_/41_[POU]
AA___GG_AAGT__AA___
15._LP_1_/41_[POU]
AA___GG_AAGT__AA___
16._LP_1_/41_[POU]
AA___GG_AAGT__AA___
17._LP_1_/41_[POU]
AA___GG_AAGT__AA___
18._LP_1_/41_[POU]
AA___GG_AAGT__AA___
19._LP_1_/41_[POU]
AA___GG_AAGT__AA___
20._RUQ_353
____GG_AA____TT__
21._RUQ_353
___GGGGCCAAGG__AGTT__
22._LP_1_/41_[POU]
AT___GG_AAGG__AG___
23._RUQ_353
AT___GG_AAGG__AG___
24._RUQ_353
ATAAAAGGGGCCAACCCCAAAGAAAGCC
 4344454647484950515253545556
_Input profile
GGTTTTAAAGAACCACGGAAGTTTCTCC
1._GC-05-148-4-01
GGTTTTAAAGAACCACGGAAGTTTCTCC
2._GC-05-148-4-01
GGTTTTAAAGAACCACGGAAGTTTCTCC
3._GC-05-055-2-06
GGTTTTAAAGAACCACGGAAGTTTCTCC
4._GC-05-055-2-06
GGTTTTAAAGAACCACGGAAGTTTCTCC
5._GC-05-148-4-01
GGTTTTAAAGAACCACGGAAGTTTCTCC
6._GC-05-055-2-06
GGTTTTAAAGAACCACGGAAGTTTCTCC
7._GC-05-055-2-06
GGTTTTAAAGAA_ACGGAAGTTTCTCC
8._GC-05-055-2-06
GGTTTTAAAGAACCACGGAAGTTTCTCC
9._GC-05-148-4-01
GGTTTTAAAGAACCACGGAAGTTTCTCC
10._LP_1_/41_[POU]
__TT_________CTCC
11._LP_1_/41_[POU]
__TT_________CTCC
12._LP_1_/41_[POU]
__TT_________CTCC
13._LP_1_/41_[POU]
__TT_________CTCC
14._LP_1_/41_[POU]
__TT_________CTCC
15._LP_1_/41_[POU]
__TT_________CTCC
16._LP_1_/41_[POU]
__TT_________CTCC
17._LP_1_/41_[POU]
__TT_________CTCC
18._LP_1_/41_[POU]
__TT_________CTCC
19._LP_1_/41_[POU]
__TT_________CTCC
20._RUQ_353
____GG_________
21._RUQ_353
GTTT__GG______CCCT_
22._LP_1_/41_[POU]
__CC_________CTCT
23._RUQ_353
__CC_________CTCT
24._RUQ_353
AC_GG_GGAGGG_GGAGACGGAGAG
 5758596061626364656667686970
_Input profile
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
1._GC-05-148-4-01
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
2._GC-05-148-4-01
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
3._GC-05-055-2-06
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
4._GC-05-055-2-06
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
5._GC-05-148-4-01
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
6._GC-05-055-2-06
TT_CGCTCCAAGGGGCCAGGTGGAGCC
7._GC-05-055-2-06
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
8._GC-05-055-2-06
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
9._GC-05-148-4-01
TTAGCGCTCCAAGGGGCCAGGTGGAGCC
10._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
11._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
12._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
13._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
14._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
15._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
16._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
17._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
18._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
19._LP_1_/41_[POU]
__CG_CCAAGG_CCAGGTGG__
20._RUQ_353
_GG______CCAA_GGAG_
21._RUQ_353
GG-CCCTCTCC_GGCCAAGGGGAG_
22._LP_1_/41_[POU]
____CTCCCG_CCAAGGGG__
23._RUQ_353
__CC_CTCCCG_CCAAGGGG__
24._RUQ_353
CCGGGGAGAGCCCGGGCCAACCCCAG_
 7172737475767778798081828384
_Input profile
CGAACTCCAGACACAGACCGCCAAACCC
1._GC-05-148-4-01
CGAACTCCAGACACAGACCGCCAAACCC
2._GC-05-148-4-01
CGAACTCCAGACACAGACCGCCAAACCC
3._GC-05-055-2-06
CGAACTCCAGACACAGACCGCCAAACCC
4._GC-05-055-2-06
CGAACTCCAGACACAGACCGCCAAACCC
5._GC-05-148-4-01
CGAACTCCAGACACAGACCGCCAAACCC
6._GC-05-055-2-06
CGAACTCCAGACACAGACCGCCAAACCC
7._GC-05-055-2-06
CGAACTCCAGACACAGACCGCCAAACCC
8._GC-05-055-2-06
CGAACTCCAGACACAGACCGCCAAACCC
9._GC-05-148-4-01
CGAACTCCAGACACAGACCGCCAAACCC
10._LP_1_/41_[POU]
_AACT_____ACCG___CC
11._LP_1_/41_[POU]
_AACT_____ACCG___CC
12._LP_1_/41_[POU]
_AACT_____ACCG___CC
13._LP_1_/41_[POU]
_AACT_____ACCG___CC
14._LP_1_/41_[POU]
_AACT_____ACCG___CC
15._LP_1_/41_[POU]
_AACT_____ACCG___CC
16._LP_1_/41_[POU]
_AACT_____ACCG___CC
17._LP_1_/41_[POU]
_AACT_____ACCG___CC
18._LP_1_/41_[POU]
_AACT_____ACCG___CC
19._LP_1_/41_[POU]
_AACT_____ACCG___CC
20._RUQ_353
_AG______CCCG__CC_
21._RUQ_353
________CCCG__CCCT
22._LP_1_/41_[POU]
_AGTT_____CCCG___CT
23._RUQ_353
_AGTT_____CCCG___CT
24._RUQ_353
__AACCGGACAC_CCCGGGAACCAG
 85868788899091929394    
_Input profile
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
1._GC-05-148-4-01
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
2._GC-05-148-4-01
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
3._GC-05-055-2-06
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
4._GC-05-055-2-06
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
5._GC-05-148-4-01
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
6._GC-05-055-2-06
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
7._GC-05-055-2-06
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
8._GC-05-055-2-06
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
9._GC-05-148-4-01
CTTTTTAGCCTTGTCTATGGX_XX_XX_XX_X
10._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
11._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
12._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
13._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
14._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
15._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
16._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
17._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
18._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
19._LP_1_/41_[POU]
CTTT_AG_TTGTCT__X_XX_XX_XX_X
20._RUQ_353
_CC__CC_TT___X_XX_XX_XX_X
21._RUQ_353
___GGCCCCTT___X_XX_XX_XX_X
22._LP_1_/41_[POU]
TTCC_GG_CCTTCT__X_XX_XX_XX_X
23._RUQ_353
TTCC_GG_CCTTCT__X_XX_XX_XX_X
24._RUQ_353
AA_AA__GGAAAGTTGGX_XX_XX_XX_X

Input profile: LP_1_/41_[POU] GC-05-148-4-01

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

1._LP_1_/41_[POU] GC-05-148-4-01

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._LP_1_/41_[POU] GC-05-148-4-01

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

3._LP_1_/41_[POU] GC-05-055-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._LP_1_/41_[POU] GC-05-055-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._LP_1_/41_[POU] GC-05-148-4-01

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._LP_1_/41_[POU] GC-05-055-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._LP_1_/41_[POU] GC-05-055-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

8._LP_1_/41_[POU] GC-05-055-2-06

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._LP_1_/41_[POU] GC-05-148-4-01

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

10._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

17._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

18._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

19._LP_1_/41_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

20._LP_1_/41_[POU] RUQ_353

66.7 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._LP_1_/41_[POU] RUQ_353

62.2 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._LP_1_/41_[POU]

56.6 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C796
 Dapeng Zhang, 2016

23._LP_1_/41_[POU] RUQ_353

56.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._LP_1_/41_[POU] RUQ_353

40.6 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240